Structure Alignment - 1CEN:_ Neighbors

Sequence alignment based on assembled pairwise structure alignments between 1CEN:_ and its neighbors. Light color indicates not-aligned residues in structural neighbors. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB.
  


  1CEN:_    3/4     SFKAGINLGGWISQYQ-------------------------V----F-----------SK
  1EDG:_   28/29    GLRLGWNLGNTFDAFN-------------------------GTNITN-----------EL
  1C0D:A   21/22    VRIAGINWF-GFET---------------------------C----N-----------YV
  1EQC:A    9/16    --IRGVNLGGWFVLEPYMTPSLFEPFQNGNDQSGVPVDEYHW----TQTLGKEAALRILQ
  1ADO:A  102/103   --GVVGIKVDKGV---------------------------------V-----------PL
  1FDJ:C  102/3103  --IVVGIKLDQGG---------------------------------A-----------PL


  1CEN:_   23/24    -------EHFD----TFI-TEKDIETIAEAGFDHVRLPFDYPIIES--DD----NVGEYK
  1EDG:_   52/53    -------DYETSWSGIKT-TKQMIDAIKQKGFNTVRIPVSWHPHVS---G----SDYKIS
  1C0D:A   38/39    -------VHGL----WSRDYRSMLDQIKSLGYNTIRLPYSDDILK------------PGT
  1EQC:A   63/70    -------KHWS----TWI-TEQDFKQISNLGLNFVRIPIGYWAFQL--LDNDPYV-----
  1ADO:A  116/117   AGTNGETTTQG----LDG-LSERCAQYKKDGADFAKWRCVLK---IGEHT----PSALAI
  1FDJ:C  116/3117  AGTNKETTIQG----LDG-LSERCAQYKKDGVDFGKWRAVLR---IADQC----PSSLAI


  1CEN:_   65/66    ----------------EDGLSYIDRCLEWCKKYNLGLVLDMHHAPGYRFQDFKT-----S
  1EDG:_   97/98    ----------------DVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGY---------
  1C0D:A   75/76    MPNSINFYQMNQDLQGLTSLQVMDKIVAYAGQIGLRIILDRHRPD----CSGQS-----A
  1EQC:A  104/111   ----------------QGQVQYLEKALGWARKNNIRVWIDLHGAPGSQNGFDNSGLRDSY
  1ADO:A  164/165   ----------------MENANVLARYASICQQNGIVPIVEPEILP--------------D
  1FDJ:C  164/3165  ----------------QENANTLARYASICQQNGLVPIVEPEVIP--------------D


  1CEN:_  104/105   TLF--EDPNQQKRFVDIWRFLAKRYI---NEREHI-AFELLNQVV------E--------
  1EDG:_  132/133   FPSSQYMASSKKYITSVWAQIAARFA---NYDEHL-IFEGMNEPR------LVGHANEWW
  1C0D:A  126/127   LWY--TSSVSEATWISDLQALAQRYK---GNPTVV-GFDLHNEPH------D--------
  1EQC:A  148/155   NFQ---NGDNTQVTLNVLNTIFKKYGGN-EYSDVVIGIELLNEPL------G--------
  1ADO:A  194/195   GDH--DLKRCQYVTEKVLAAVYKALSDHHIYLEGT-LLKPNMVTPGHACTQK--------
  1FDJ:C  194/3195  GDH--DLEHCQYVTEKVLAAVYKALNDHHVYLEGT-LLKPNMVTAGHACTKK--------


  1CEN:_  144/145   -------P--D--S-------TRWNKLMLECIKAIREI---DSTMWLYIGGNN-------
  1EDG:_  182/183   PELTNSDV--VDSI-------NCINQLNQDFVNTVRATGGKNASRYLMCPGY--------
  1C0D:A  166/167   -------P--A--CWGCGDPSIDWRLAAERAGNAVLSV---NPNLLIFVEGVQSYNGDSY
  1EQC:A  190/197   -------PVLN--M-------DKLKQFFLDGYNSLRQT---GSVTPVIIHDAF-------
  1ADO:A  243/244   -------Y--S--H-------EEIAMATVTALRRTV-----PPAVTGVTFLSG-------
  1FDJ:C  243/3244  -------Y--T--P-------EQVAMATVTALHRTV-----PAAVPGICFLSG-------


  1CEN:_  176/177   -YN----SPDELK--N-L--ADI----D--D-----DYIVYNFH---FY-NP----FFFT
  1EDG:_  225/226   -VA----SPDGATNDY-F--RMP----N--DISGNNNKIIVSVH---AY-CP----WNFA
  1C0D:A  212/213   WWG----GNLQGA--GQY--PVV----LNVP-----NRLVYSAH---DY-A-------TS
  1EQC:A  224/231   --------QVFGY--W-N--NFLTVAEG--Q-----WNVVVDHH---HY-QVFSGGEL--
  1ADO:A  273/274   -GQSEEEASINLN--A-INKCPL----L--K-----PWALTFSYGRALQASA----LKAW
  1FDJ:C  273/3274  -GMSEEDATLNLN--A-INLCPL----P--K-----PWKLSFSYGRALQASA----LAAW


  1CEN:_  207/208   HQKAHWSESAMAYNRTVKYP--GQYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKP
  1EDG:_  263/264   GLA-------MADGGTNAWNIND------------------------SKDQSEVTWFMDN
  1C0D:A  244/245   VG--------------------------------------PQTWFSDPTFPNNMPGIWNK
  1EQC:A  258/265   -------------------------------------------SRNINDHISVACNWGWD
  1ADO:A  314/315   --------------GGKKEN--L------------------------KAAQEEYVKRALA
  1FDJ:C  314/3315  --------------GGKAEN--K------------------------KATQEAFMKRAVV


  1CEN:_  265/266   -AIEFREKKKCKLYCGEFGVIAIA------------------------------------
  1EDG:_  292/293   -IYNKYTSRGIPVIIGECGAVDKN------------------------------------
  1C0D:A  266/267   NWGYLFNQNIAPVWLGEFGTTLQS------------------------------------
  1EQC:A  275/282   -AKKES----HWNVAGEWSAA--LTDCAKWLNGVNRGARYEGAYDNAPYIGSCQPLLDIS
  1ADO:A  334/335   -NSLACQGK---------------------------------------------------
  1FDJ:C  334/3335  -NCQAAKGQ---------------------------------------------------


  1CEN:_  288/289   -----DLESRIKWHEDYISLLEE------YDIGGAVWNYKK-----M---D---FEIYN-
  1EDG:_  315/316   -----NLKTRVEYMSYYVAQAKA------RGILCILWDNNNFSGTGE---L---FGFFDR
  1C0D:A  290/291   -----T--TDQTWLKTLVQYLRPTAQYGADSFQWTFWSWNP-----D---SGDTGGILK-
  1EQC:A  328/335   QWSDEHKTDTRRYIEAQLDAFE-------YTGGWVFWSWKT-----ENAPE---WSFQT-
  1ADO:A            ------------------------------------------------------------
  1FDJ:C            ------------------------------------------------------------


  1CEN:_  325/326   EDRKPVSQELVNILAR
  1EDG:_  358/359   RSCQFKFPEIIDGMVK
  1C0D:A  334/335   DDWQTVDTDKDGYLAP
  1EQC:A  372/379   ---LTYNGLFPQPV--
  1ADO:A            ----------------
  1FDJ:C            ----------------

1EDG:_ 

2.3 18.2
301 6.9
1C0D:A 

3.2 15.7
284 6.3


3.4 16.9
272 -1.0
1EQC:A 

2.7 19.9
272 6.0


3.5 15.6
262 -1.0


3.5 16.4
256 -1.0
1ADO:A 

3.9 6.6
212 5.7


3.9 7.7
209 -1.0


4.6 6.7
195 -1.0


4.2 7.8
193 -1.0
1FDJ:C 

3.9 6.1
212 5.7


3.9 8.1
209 -1.0


4.6 6.7
195 -1.0


4.2 8.8
193 -1.0


0.5 75.8
240 -1.0
1CEN:_ 1EDG:_ 1C0D:A 1EQC:A 1ADO:A
Each cell in distance matrix provides: 

RMSD(Å) Sequence identity(%)
Length of alignment Z-score


 

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