Structure Alignment - 1DIV:_ Neighbors

Sequence alignment based on assembled pairwise structure alignments between 1DIV:_ and its neighbors. Light color indicates not-aligned residues in structural neighbors. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB. 




  1DIV:_    1/2     MKV----------------------IFLKD---VKGK-------------GKKGEIK---
  487D:K    1/2     MKV----------------------IFLKD---VKGK-------------GKKGEIK---
  1QT2:A            ------------------------------------------------------------
  1G1I:B            ------------------------------------------------------------
  1FT9:B   18/19    TFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH
  1A16:_            ------------------------------------------------------------
  1EI3:F            ------------------------------------------------------------
  1QKK:A   66/68    -----------------------------F---RKILALD----------PDLPMIL---


  1DIV:_   20/21    ------------NVADGYANNFLFKQGL----AIE-------ATP--ANLKALEAQKQKE
  487D:K   20/21    ------------NVADGYANNFLFKQGL----AIE-------ATP--ANLKALEAQKQKE
  1QT2:A    3/4     ------------------------------------------LIE--SAMVLALAATVTA
  1G1I:B    5/100   -------------------------------------------MD--RVVKEMRRQLEXI
  1FT9:B   78/79    SGCLVEATERTEVR--------FADIRT----FEQ-------KLQTCPSMAWGLIAILGR
  1A16:_  159/160   ---------------------------------PA-------TM--------IDWRPVVH
  1EI3:F    5/6     ---------------RENCCILDER-FG----SYC-------PTT--CGIADFFNKYRLT
  1QKK:A   81/83    -------------VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLV--QSARRAEEKRRLV


  1DIV:_   55/56    QRQAAE---ELANAKKLKEQLEK--LTV-----------TI--P--AKAG---E------
  487D:K   55/56    QRQAAE---ELANAKKLKEQLEK--LTV-----------TI--P--AKAG---E------
  1QT2:A   19/20    GVMFYY---QSASDGNKSQNAISEVMSA-----------TS--A--INGLYIGQ------
  1G1I:B   20/115   DKLTTR---EIEQVELLKRIYDK--LT---------------------------------
  1FT9:B  119/120   ALTSCM---RTIED-------------LMFHDIKQRIAGFFIDH--ANTT---GRQTQGG
  1A16:_  171/172   EMRLFKSPEEIAVLRRAGEITAMAHTRAME---------KC--R--PG------------
  1EI3:F   36/37    TDGELL---EIEGLLQQATNSTG--SIE-----------YL--IQHIKTI---Y------
  1QKK:A  126/128   MENRSL---RRAAEAASEGL----------------------------------------


  1DIV:_   86/87    GGRLFGSITSKQ------IAESLQAQHGL----KLDKRKIEL-AD------------AIR
  487D:K   86/87    GGRLFGSITSKQ------IAESLQAQHGL----KLDKRKIEL-AD------------AIR
  1QT2:A   55/56    TSYSGLDSTIL----------------------LNTSAIPDN-YK------------DTT
  1G1I:B            ------------------------------------------------------------
  1FT9:B  158/159   VIVS-------VDFTVEEIANLIGSSRQT----TSTALNSLIKEG------------YI-
  1A16:_  206/207   -------MFEYH------LEGEIHHEFNRHGARYPSYNTIVG-SGENGCILHYTENECEM
  1EI3:F   69/70    PS----------------------------------------------------------
  1QKK:A            ------------------------------------------------------------


  1DIV:_  123/124   ALGYTNVPVK----L------HPEV--TATLKVHVTEQK
  487D:K  123/124   ALGYTNVPVK----L------HPEV--TATLKVHVTEQK
  1QT2:A   80/81    NKKITNPFGGELNVG------PANNNTAFGYYLT-----
  1G1I:B            ---------------------------------------
  1FT9:B  194/195   --SRQG-------------------------RGHYT---
  1A16:_  252/253   RDGDLVLIDA----GCEYKGYA--G--DITRTFPVNG--
  1EI3:F            ---------------------------------------
  1QKK:A            ---------------------------------------
487D:K
0.0 100.0
149 7.1
1QT2:A
6.2 6.4
94 4.6
6.2 6.4
94 -1.0
1G1I:B
1.0 21.6
37 4.4
1.0 21.6
37 -1.0
2.7 0.0
37 -1.0
1FT9:B
6.8 6.7
104 4.4
6.9 6.7
104 -1.0
7.2 11.7
60 -1.0
2.2 0.0
26 -1.0
1A16:_
5.0 2.2
93 4.1
5.0 7.5
93 -1.0
6.6 5.1
78 -1.0
4.2 12.9
31 -1.0
9.5 4.6
65 -1.0
1EI3:F
5.9 4.7
64 4.1
5.9 4.7
64 -1.0
3.6 6.1
49 -1.0
2.1 8.1
37 -1.0
4.8 4.3
46 -1.0
6.9 7.5
40 -1.0
1QKK:A
2.7 7.9
63 3.9
2.7 7.9
63 -1.0
2.5 6.1
33 -1.0
1.6 0.0
32 -1.0
6.3 9.6
52 -1.0
4.7 3.4
29 -1.0
3.3 8.3
48 -1.0
1DIV:_ 487D:K 1QT2:A 1G1I:B 1FT9:B 1A16:_ 1EI3:F

Each cell in distance matrix provides:
RMSD(Å) Sequence identity(%)
Length of alignment Z-score



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