Structure Alignment - 2CPK:E Neighbors

Sequence alignment based on assembled pairwise structure alignments between 2CPK:E and its neighbors. Light color indicates not-aligned residues in structural neighbors. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB. 




  2CPK:E   34/35    SQNT--AQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQ-----KVVKLKQIE
  1KOA:_   42/5932  VEIKHDHVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP-----HES---DKE
  1HOW:A   17/155   -------KDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-----K----VYTE
  1JST:C    1/2     --------MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGV------PS
  2CSN:_    8/10    --------GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR-------SD---AP
  1DM2:A    1/2     --------MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGV------PS


  2CPK:E   87/88    HTLNEKRILQAV-N-----------FPFLVKLEFSFKDN----SNLYMVMEYVAGGEMFS
  1KOA:_   94/5984  TVRKEIQTMSVL-R-----------HPTLVNLHDAFEDD----NEMVMIYEFMSGGELFE
  1HOW:A   61/199   AAEDEIKLLQRV-NDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLA
  1JST:C   47/48    TAIREISLLKEL-N-----------HPNIVKLLDVIHTE----NKLYLVFEFL-HQDLKK
  2CSN:_   50/52    QLRDEYRTYKLLAG-----------CTGIPNVYYFGQEG----LHNVLVIDLLGP-SLED
  1DM2:A   47/48    TAIREISLLKEL-N-----------HPNIVKLLDVIHTE----NKLYLVFEFL-HQDLKK


  2CPK:E  131/132   HLRR-I-G--RFSEPHARFYAAQIVLTFEYLHS-LDLIYRDLKPENLLIDQ-----Q---
  1KOA:_  138/6028  KVAD-EHN--KMSEDEAVEYMRQVCKGLCHMHE-NNYVHLDLKPENIMFTTKR---S---
  1HOW:A  119/257   LIKK-Y-EHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEI-----VDSP
  1JST:C   90/91    FMDA-S-ALTGIPLPLIKSYLFQLLQGLAFCHS-HRVLHRDLKPQNLLINT-----E---
  2CSN:_   94/96    LLDLCG-R--KFSVKTVAMAAKQMLARVQSIHE-KSLVYRDIKPDNFLIGRPNSKNA---
  1DM2:A   90/91    FMDA-S-ALTGIPLPLIKSYLFQLLQGLAFCHS-HRVLHRDLKPQNLLINT-----E---


  2CPK:E  178/179   ---GYIQVTDFGFAKRVK------G-RT----WTL---CG-TPEYLAPEIILSK-GYNKA
  1KOA:_  188/6078  ---NELKLIDFGLTAHLD------PKQS----VKV---TTGTAEFAAPEVAEGK-PVGYY
  1HOW:A  172/542   ENLIQIKIADLGNACWYD------E-HY----TNS---IQ-TREYRSPEVLLGA-PWGCG
  1JST:C  139/140   ---GAIKLADFGLARAFG------V-PV----RTYXHEVV-TLWYRAPEILLGCKYYSTA
  2CSN:_  147/149   ---NMIYVVDFGMVKFYRDPVTKQH-IPYREKKNL---SG-TARYMSINTHLGR-EQSRR
  1DM2:A  139/140   ---GAIKLADFGLARAFG------V-PV----RTYTHEVV-TLWYRAPEILLGCKYYSTA


  2CPK:E  219/220   VDWWALGVLIYEMAAGYPPFFAD-------QPIQIYEKIVSGKV----------------
  1KOA:_  231/6121  TDMWSVGVLSYILLSGLSPFGGE-------NDDETLRNVKSCDW----------------
  1HOW:A  216/586   ADIWSTACLIFELITGDFLFE---------------------------------------
  1JST:C  184/185   VDIWSLGCIFAEMVTRRALFPGD-------SEIDQLFRI--FRTLGTPDEVVWPGVTSMP
  2CSN:_  198/200   DDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLR---------------
  1DM2:A  184/185   VDIWSLGCIFAEMVTRRALFPGD-------SEIDQLFRI--FRTLGTPDEVVWPGVTSMP


  2CPK:E  256/257   ---------------RF----PSHFSSDLKDLLRNLLQVDLTKRFGN---LKNGVNDIKN
  1KOA:_  268/6158  ---------------NMDDSAFSGISEDGKDFIRKLLLADPNTRMT--------IHQALE
  1HOW:A            ------------------------------------------------------------
  1JST:C  235/236   DYKPSFPKWARQDFSKV----VPPLDEDGRSLLSQMLHYDPNKRIS--------AKAALA
  2CSN:_  243/245   ---------------EL----CAGFPEEFYKYMHYARN--------LAFDATPDYDYLQG
  1DM2:A  235/236   DYKPSFPKWARQDFSKV----VPPLDEDGRSLLSQMLHYDPNKRIS--------AKAALA


  2CPK:E  294/295   HKWFATTDWIAIYQRKVEAPFIPKF
  1KOA:_  305/6195  HPWLTPG------------------
  1HOW:A            -------------------------
  1JST:C  283/284   HPFFQDV---------TKPVPHLRL
  2CSN:_  276/278   L-FSKV-------------------
  1DM2:A  283/284   HPFFQDV---------TKPVPHLRL
1KOA:_
2.727.8
2597.1
1HOW:A
2.127.6
1966.8
2.325.6
195-1.0
1JST:C
2.327.3
2566.8
2.826.3
247-1.0
2.434.4
195-1.0
2CSN:_
2.319.2
2456.8
3.118.7
241-1.0
2.522.0
191-1.0
2.719.5
236-1.0
1DM2:A
2.128.3
2566.7
2.826.3
247-1.0
2.234.4
195-1.0
1.999.7
298-1.0
2.819.5
236-1.0
2CPK:E 1KOA:_ 1HOW:A 1JST:C 2CSN:_

Each cell in distance matrix provides:
RMSD(Å) Sequence identity(%)
Length of alignment Z-score



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