1F5S: Phosphoserine Phosphatase
Structure Alignment
Combinatorial Extension (CE) was used for structural
alignment of selected proteins. Using a
RMSD of < 3 Angstroms and setting Sequence Identity to > 20%, I was able
to select three other proteins for comparison with my protein: 1J97 (99.5% Seq. Id.),
1FQU (22.0%), and 1EUL (21.5%). Below
are the results for structural alignment:
1F5S:A 1/2 MEKKKKLILFDFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLL
1J97:A 1/2 MEKKKKLILFXFDSTLVNNETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKRVSLL
1EUL:A ------------------------------------------------------------
1FQU:A ------------------------------------------------------------
1F5S:A 61/62 KDLPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL-----
1J97:A 61/62 KDLPIEKVEKAIKRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL-----
1EUL:A 600/601 -------------LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENE
1FQU:A 599/600 ------------MLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENE
1F5S:A 116/117 --------------------------DYAFANRLIVKDGKLTGDVEGEVLKENAKGEILE
1J97:A 116/117 --------------------------DYAFANRLIVKDGKLTGDVEGEVLKENAKGEILE
1EUL:A 647/648 EVADRAYTGREFDDLPLAEQREACRRACCFAR-----------------VEPSHKSKIVE
1FQU:A 647/648 EVADRAYTGREFDDLPLAEQREACRRACCFAR----------------VE-PSHKSKIVE
1F5S:A 150/151 KIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAFCAKP-ILKEKADICIEKRDLREILK
1J97:A 150/151 KIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAFCAKP-ILKEKADICIEKRDLREILK
1EUL:A 690/691 YLQS--YDE--ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVA
1FQU:A 690/691 YLQS---YDE-ITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVA
1F5S:A 209/210 YIK
1J97:A 209/210 YIK
1EUL:A 746/747 AV-
1FQU:A 746/747 AVE
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1J97:A
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1EUL:A
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1FQU:A
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1F5S:A
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1J97:A
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1EUL:A
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Each cell in distance matrix provides:
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RMSD(Å)
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Sequence identity(%)
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Length of
alignment
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Z-score
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