ClustalW results

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These are the scores I got when running the selected sequences (structural neighbors) from PDB and ran them thru clustalw.


CLUSTAL W (1.82) Multiple Sequence Alignments

Sequence format is Pearson
Sequence 1: 1VR2_A          316 aa
Sequence 2: 1YDT_E          350 aa
Sequence 3: 1YDT_I           20 aa
Sequence 4: 1FVR_A          327 aa
Sequence 5: 1FVR_B          327 aa

Start of Pairwise alignments

Sequences (1:2) Aligned. Score:  16
Sequences (1:3) Aligned. Score:  15
Sequences (1:4) Aligned. Score:  35
Sequences (1:5) Aligned. Score:  35
Sequences (2:3) Aligned. Score:  10
Sequences (2:4) Aligned. Score:  15
Sequences (2:5) Aligned. Score:  15
Sequences (3:4) Aligned. Score:  20
Sequences (3:5) Aligned. Score:  20
Sequences (4:5) Aligned. Score:  100
Guide tree        file created:   [/ebi/extserv/old-work/856930.219505.dnd]

Start of Multiple Alignment
There are 4 groups
Aligning...
Group 1: Sequences:   2      Score:7172
Group 2: Sequences:   3      Score:4435
Group 3:                     Delayed
Group 4:                     Delayed
Sequence:3     Score:85
Sequence:2     Score:1729
Alignment Score 3518
 
My Multiple Sequence Alignment