Structure Alignment - 1FMK:_ Neighbors

Sequence alignment based on assembled pairwise structure alignments between 1FMK:_ and its neighbors. Light color indicates not-aligned residues in structural neighbors. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB. 




  1FMK:_  177/259   DAWEIPRESL-RLEVKLG----QGCFGEVWMGTWNG------TTRVAIKTL----K--PG
  1YDT:E   36/37    --NTAHLDQFERIKTLGT----G--SFGRVMLVKHMET----GNHYAMKILDKQKV--VK
  1FVR:B   18/816   IYPVLDWNDI-KFQDVIGEGNFG----QVLKARIKKDGL---RMDAAIKRMKEY-ASKDD
  1VR2:A   20/826   SKWEFPRDRL-KLGKPLG----RGAFGQVIEADAFGIDKTATCRTVAVKML----KEGAT


  1FMK:_  220/302   TMSPEAFLQEAQVMKK-LRHEKLVQLYAV-------VSE-EPIYIVTEYMSKGSLLDFLK
  1YDT:E   82/83    LKQIEHTLNEKRILQA-VNFPFLVKLEFS-------FKDNSNLYMVMEYVAGGEMFSHLR
  1FVR:B   69/867   H---RDFAGELEVLCKLGHHPNIINLLGACEHRGY-L------YLAIEYAPHGNLLDFLR
  1VR2:A   71/877   HSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGPL------MVIVEFCKFGNLSTYLR


  1FMK:_  271/353   GE--------------TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGEN
  1YDT:E  134/135   R----------------IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQ
  1FVR:B  119/917   KSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGEN
  1VR2:A  125/931   SKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK


  1FMK:_  317/399   LVCKVADFGLARLIEDN--EYTARQGAK-FPIKWTAPEAALYGRFTIKSDVWSFGILLTE
  1YDT:E  178/179   GYIQVTDFGF----AKR--VKGRTWXLC-GTPEYLAPEIILSKGYNKAVDWWALGVLIYE
  1FVR:B  179/977   YVAKIADFGLSRGQEVYVKKTMGRL-----PVRWMAIESLNYSVYTTNSDVWSYGVLLWE
  1VR2:A  185/1041  NVVKICDFGLARDIYKD--PDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE


  1FMK:_  374/456   LTTKGRVPYPGMVNREVLDQVER---GYRMPCPPECPESLHDLMCQCWRKEPEERPT---
  1YDT:E  231/232   MAAG-YPPFFADQPIQIYEKIV----SGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLK
  1FVR:B  234/1032  IVSLGGTPYCGMTCAELYEKLPQ---GYRLEKPLNCDDEVYDLMRQCWREKPYERPS---
  1VR2:A  243/1099  IFSLGASPYPGVKID--EEFCRRLKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPT---


  1FMK:_  428/510   --FEYLQAFLEDYFTSTEP
  1YDT:E  286/287   DGVNDIKNH--KWFATTDW
  1FVR:B  288/1086  --FAQILVSLNRMLEE---
  1VR2:A  298/1154  --FSELVEHLGNLLQA---
1YDT:E
2.9 20.2
254 6.6
1FVR:B
3.0 38.0
249 6.5
3.9 19.0
242 -1.0
1VR2:A
3.2 36.1
258 6.5
4.1 18.7
246 -1.0
3.0 37.0
273 -1.0
1FMK:_ 1YDT:E 1FVR:B

Each cell in distance matrix provides:
RMSD(Å) Sequence identity(%)
Length of alignment Z-score