Databases, Data Formats and Structural Biology Resources

What do we do with all the data?

Database - A Narrow Definition

Database - Broader Definition

Database - Examples

Database - Examples [2]

The DB tool box

General DB data models

Creating specific RDB Models

Normalization [2]

Normalization [3]

Normalization [4]

Formal Normalization

to normalize or not to normalizeÖ.?

Finalizing the data model

Data Definition Languages

SQL - 1 page basics

Structured vs. Semi-Structured

PDB file format

PDB file format [2]

mmCIF file format

mmCIF file format [2]

mmCIF file format [3]

The Protein Data Bank

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RCSB Mirror Sites

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PDB Content Statistics

PDB Content Statistics (cont.)

SearchLite and SearchFields

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Functionality Overview

Database Integration Details

The Needle And How To Find It

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Initial Findings

Now what?

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Structure Neighboring

PDB - A Small Part of A Big Picture

Bioinformatics challenges

GenBank Databases

The BLAST family

PSI BLAST

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It is impossible to imagine...

that 23 years ago we would...

have the blueprint to life

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