Advanced Bioinformatics Workshop - Course Page

Lecture Slides:

• Part 1, Day 1: Molecular Biology for Computer Scientists, Dynamic Programming, Bayes' theorem
• Part 2, Day 2: Hidden Markov Models
• Part 3, Day 2: Neural Networks
• Part 4, Day 2: Data Mining in Bioinformatics

Links:

• multi alignment tutorial and exercises
• Solutions to exercises
• VSNS BioComputing Division Multiple Alignment Resource Page
• MSA Visualization
• Sequence Logos
• Hidden Markov Models:
  • HMMER ("hammer" as in more precise than a blast)
  • Glimmer
  • MEME/MAST
  • GeneScan
  • Veil
  • Genie
• Artificial Neural Networks:
  • GRAIL
  • The PHD Server
  • nnpredict interface
  • Network Protein Sequence Analysis using Hierarchical Neural Nets
  • ANN tool kits
  • A large collection of ANN Book references

Final Exam