Recommended Reading List

Books

Papers

Nucleic Acids Research, Vol.27, No. 1 (1999) "GenBank". Dennis A. Benson, Mark S. Boguski, David J. Lipman, James Ostell, B. F. Francis Ouellette, Barbara A. Rapp and David L. Wheeler pp. 12-17

Nucleic Acids Research, Vol.27, No. 1 (1999) "The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999". Amos Bairoch and Rolf Apweiler pp. 49-54

Nucleic Acids Research, Vol.27, No. 1 (1999) "The PROSITE database, its status in 1999". Kay Hofmann, Philipp Bucher, Laurent Falquet and Amos Bairoch pp. 215-219

Nucleic Acids Research, Vol.27, No. 1 (1999) "PRINTS prepares for the new millennium". T. K. Attwood, D. R. Flower, A. P. Lewis, J. E. Mabey, S. R. Morgan, P. Scordis, J. N. Selley and W. Wright pp. 220-225

Nucleic Acids Research, Vol.27, No. 1 (1999) "New features of the Blocks Database servers". Jorja G. Henikoff, Steven Henikoff and Shmuel Pietrokovski pp. 226-228

Nucleic Acids Research, Vol.27, No. 1 (1999) "MMDB: Entrez's 3D structure database". Aron Marchler-Bauer, Kenneth J. Addess, Colombe Chappey, Lewis Geer, Thomas Madej, Yo Matsuo, Yanli Wang and Stephen H. Bryant pp. 240-243

Nucleic Acids Research, Vol.27, No. 1 (1999) "SCOP: a Structural Classification of Proteins database". Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin and Cyrus Chothia pp. 254-256

Nucleic Acids Research, Vol.27, No. 1 (1999) "Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins". Alex Bateman, Ewan Birney, Richard Durbin, Sean R. Eddy, Robert D. Finn and Erik L. L. Sonnhammer pp. 260-262

 

Other Papers

Nature Genetics Vol.4, p.332 (August 1993) "dbEST — database for "expressed sequence tags". M. Boguski, T.M.J. Lowe, and C.M. Tolstoshev

Nature Genetics Vol.3, p266 (March 1993) "Identification of protein coding regions by database similarity search". W. Gish & D.J. States

Nucleic Acids Research, Vol.25, No. 17 (1997) "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs". S.F.Altschul, T.L.Madden, A.A.Schaffer, J.Zhang, Z.Zhang, W.Miller and D. Lipman

Proc.Natl.Acad.Sci.USA Vol.87, p.2264-68 (March 1990) "Methods for assesing the statistical significance of molecular sequence features by using general scoring schemes". S.Karlin & S.Altschul

Methods in Enzymology Vol. 266, Chapter 27 "Local Alignment Statistics". S.Altschul and W.Gish

Genome Research Vol.6, p.791- (1996) "Generation and analysis of 280,000 human expressed sequence tags". Hillier, L et al.

Genome Research Vol.6, p.829- (1996) "Toward the development of a gene index to the human genome: An assesment of the nature of high throughput EST sequence data". J.S.Aaronson et al.

Science Vol.253, p. 164-253 (1991) "A method to identify protein sequences that fold into a known three-dimensional structure". J.Bowie

Genome Research Vol.6, p.846-857 (1996) "Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences". W.Makalowski, J.Zhang, M.Boguski

CABIOS Vol.13, p.81-87, (1997) "Post-processing of BLAST results using databases of clustered sequences". G.S.Miller & R.Fuchs